Because used A3640s are often available at a good price from people who upgraded their A4000/040 with a faster CPU board, one might be tempted to use it in the A3000 in spite of the known problems. With a little work and a little luck, it might work very well.
For daring people who want to do such an upgrade of their A3000, I collected the following information about possible problems and how to solve them. Good Luck!
A3640 U209 3.0 -01 3.1 -02 3.2 -03
The earlier A3640s have a large heat sink on the 68040 CPU that would need some room in one of the two floppy drive bays of the A3000. Newer A3640s come with a flat heat sink that fits under the drive bridge without problems.
If the heat sink of your A3640 is too high, probably the best thing to do is to get a smaller one (you could also get a larger case or modify the drive bridge). Largely available are i486 CPU coolers that consist of a heat sink with a small fan and mounting clips.
Because the i486 is a little bit smaller than the 68040, you should get a i486 cooler with elastic clips that can be widened a bit. You also need a cooler where the little fan can be removed, to make it fit below the drive bridge.
If you use the A3640 in the A3000 desktop, you always risk overheating the 68040 or any other part in the computer. This could cause errors, crashes or shortended life of certain parts.
To avoid heat problems, it might be a good idea to install an additional fan in the A3000, avoid using hot hard drives inside the case and not using it with high room temperatures.